Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs4981305 | chr14:36252840 | C/G | 5.08E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs4981306 | chr14:36258418 | G/C | 5.07E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs4981307 | chr14:36258496 | C/A | 5.07E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs4982299 | chr14:36116089 | G/T | 5.07E-6 | 490 | 15.9 | 16.63 | 8.33 | KM Plot |
| THCA | rs4982302 | chr14:36127354 | T/C | 5.16E-6 | 489 | 15.97 | 16.35 | 8.33 | KM Plot |
| THCA | rs4982316 | chr14:36328273 | G/C | 2.04E-6 | 485 | 16.08 | 15.57 | 12.9 | KM Plot |
| THCA | rs4982667 | chr14:23238495 | A/T | 3.73E-5 | 482 | 15.27 | 15.17 | 21.67 | KM Plot |
| THCA | rs4982900 | chr14:24825008 | A/C | 0.000132 | 477 | 13.97 | 15.3 | 16.2 | KM Plot |
| THCA | rs4982901 | chr14:24825009 | G/C | 0.000132 | 477 | 13.97 | 15.3 | 16.2 | KM Plot |
| THCA | rs4988359 | chr11:112025915 | T/C | 2.79E-5 | 489 | 15.97 | 16.27 | 11.38 | KM Plot |
| THCA | rs4999280 | chr19:43556679 | C/T | 0.000236 | 490 | 15.27 | 18.93 | 10.08 | KM Plot |
| THCA | rs5022768 | chr2:201963576 | G/A | 0.000169 | 478 | 16.13 | 15.77 | 5.07 | KM Plot |
| THCA | rs5026400 | chr16:6504910 | C/A | 6.71E-5 | 486 | 12.43 | 16.15 | 16.47 | KM Plot |
| THCA | rs520001 | chr11:104894594 | A/G | 1.63E-6 | 490 | 15.9 | 16.52 | 11.47 | KM Plot |
| THCA | rs526167 | chr11:104902769 | T/C | 1.68E-6 | 489 | 15.9 | 16.4 | 11.47 | KM Plot |